species:   Clros
pid:       PID2259
parent:    cro-mir-53
paralog:   
locus:     CADEHS020000005.2:2679532-2679616
matures:   ['UACCAGUACCGUCGUCGUC', 'CGGCACGGACUGGGU']
srr:       ERR5950923
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950923.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950923.cram CADEHS020000005.2:2679532-2679616

1 out of bounds
4 alignments
1 proper strand
1 stranded perfect matches

    ****************                                              **************     
UACCAGUACCGUCGUCGUCUUUGUCUUCGGGAUCAUAGAUGGUGAUCUCGUCCUCCUGCCAAGUAAGCGCGGCACGGACUGGGUC
..(((((.((((.(((((.((((.((((((((((((.....)))))))))..........))))))).))))))))))))))...
UACCAGUACCGUCGUCGUC------------------------------------------------------------------ l=19 a=0 c
---------------------------------------------------------------------CGGCACGGACUGGGU- l=15 a=0 c*
--------------------------------------------------------------------GCGGCACGGACU----- l=12 a=1 ma
------UACCGUCGUCGUCU----------------------------------------------------------------- l=14 a=0 ma*

--------------------------------------------------------------------GCGGCACGGACU----- l=12 a=1 (ma)

mb-01011
ax-1011001
ku-01
ss-100010011100
fn-001
